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Description of the clinical picture and assessment of functional activity of the CFTR channel in a patient with a complex allele [S466X; R1070Q]

https://doi.org/10.18093/0869-0189-2023-33-2-233-242

Abstract

The presence of pathogenic variants in the CFTR gene causes cystic fibrosis (CF) through various molecular mechanisms that affect the formation and functional activity of the CFTR chloride channel. An important factor affecting the phenotypic manifestations of CF and the effectiveness of targeted therapy is the presence of complex alleles with > 2 consecutive mutations per 1 allele, or in the cis position. The influence of complex alleles on the manifestations of CF has not been sufficiently studied globally due to the small number of studies.

The aim of the study was to investigate the influence of the complex allele [S466X; R1070Q] on the phenotypic manifestations of CF and the effectiveness of targeted therapy in a model of intestinal organoids from a patient with [S466X; R1070Q]/CFTRdele2,3 genotype.

Methods. We used medical history data, intestinal current measurement, intestinal organoid method, and forskolin test.

Results. The progressive nature of the disease with a clear degradation of lung function was established. The ICM method showed absent chloride channel function. The tests on the culture of organoids obtained from the intestinal tissue indicated a complete loss of the chloride channel function. In addition, the complex allele [S466X; R1070Q] was insensitive to all targeted drugs tested.

Conclusion. The complex allele [S466X; R1070Q] causes a complete loss of the functional CFTR protein and is not sensitive to any of the approved targeted drugs.

About the Authors

M. G. Krasnova
Federal State Budgetary Scientific Institution “Research Centre for Medical Genetics”, Ministry of Science and Higher Education of the Russian Federation
Russian Federation

Maria G. Krasnova, Postgraduate Student, Laboratory Assistant-Researcher, Laboratory о! Stem Cell Genetics.

Ul. Moskvorechye 1, Moscow, 115522; tel.: (495) 324-20-24

 


Competing Interests:

The authors did not declare any conflicts of interests



Yu. L. Melianovskaya
Federal State Budgetary Scientific Institution “Research Centre for Medical Genetics”, Ministry of Science and Higher Education of the Russian Federation
Russian Federation

Yuliya L. Mel’yanovskaya, Researcher, Scientific and Clinical Department of Cystic Fibrosis.

Ul. Moskvorechye 1, Moscow, 115522; tel.: (495) 324-20-24


Competing Interests:

The authors did not declare any conflicts of interests



S. A. Krasovskiy
Federal State Budgetary Scientific Institution “Research Centre for Medical Genetics”, Ministry of Science and Higher Education of the Russian Federation; Federal Pulmonology Research Institute, Federal Medical and Biological Agency of Russia; State Budgetary Healthcare Institution “City Clinical Hospital named after D.D.Pletnev, Moscow City Health Department”
Russian Federation

Stanislav А. Krasovsky - Candidate of Medicine, Senior Researcher, Cystic Fibrosis Laboratory, Federal Pulmonology Research Institute, Federal Medical and Biological Agency of Russia; Leading Researcher, Scientific and Clinical Department, RCMG”; Pulmonologist, Department of Cystic Fibrosis, SBHI “City Clinical Hospital named after D.D.Pletnev, Moscow City Health Department”; Author ID: 688178.

Ul. Moskvorechye 1, Moscow, 115522; Orekhovyy bul’var 28, Moscow, 115682; ul. Odinnadtsataya Parkovaya 32, Moscow, 105077; tel.: (495) 965-23-24


Competing Interests:

The authors did not declare any conflicts of interests



N. V. Bulatenko
Federal State Budgetary Scientific Institution “Research Centre for Medical Genetics”, Ministry of Science and Higher Education of the Russian Federation
Russian Federation

Nataliya V. Bulatenko - Junior Researcher, Laboratory of Stem Cell Genetics.

Ul. Moskvorechye 1, Moscow, 115522; tel.: (495) 324 20-24


Competing Interests:

The authors did not declare any conflicts of interests



A. S. Efremova
Federal State Budgetary Scientific Institution “Research Centre for Medical Genetics”, Ministry of Science and Higher Education of the Russian Federation
Russian Federation

Anna S. Efremova - Candidate of Biology, Leading Researcher, Laboratory of Stem Cell Genetics.

Ul. Moskvorechye 1, Moscow, 115522; tel.: (495) 324-20-24


Competing Interests:

The authors did not declare any conflicts of interests



T. B. Bukharova
Federal State Budgetary Scientific Institution “Research Centre for Medical Genetics”, Ministry of Science and Higher Education of the Russian Federation
Russian Federation

Tatiana B. Bukharova - Candidate of Biology, Leading Researcher, Laboratory of Stem Cell Genetics.

Ul. Moskvorechye 1, Moscow, 115522; tel.: (495) 324-20-24


Competing Interests:

The authors did not declare any conflicts of interests



D. V. Goldshtein
Federal State Budgetary Scientific Institution “Research Centre for Medical Genetics”, Ministry of Science and Higher Education of the Russian Federation
Russian Federation

Dmitry V. Goldshtein - Doctor of Biology, Professor, Head of the Laboratory of Stem Cell Genetics.

Ul. Moskvorechye 1, Moscow, 115522; tel.: (495) 324-20-24


Competing Interests:

The authors did not declare any conflicts of interests



References

1. Shteinberg M., Haq I.J, Polineni D., Davies J.C. Cystic fibrosis. Lancet. 2021; 397 (10290): 2195-2211. DOI: 10.1016/S0140-6736(20)32542-3.

2. CFTR2. Clinical and functional translation of CFTR. Updated: April 29, 2022. Available at: https://cftr2.org/

3. McDermott G., Reece E., Renwick J. Microbiology of the cystic fibrosis airway. In: Schmidt T.M., ed. Encyclopedia of Microbiology. 4th Edn. Academic Press; 2019: 186-198. DOI: 10.1016/B978-0-12-809633-8.90263-2.

4. Mickle J.E., Cutting G.R. Genotype-phenotype relationships in cystic fibrosis. Med. Clin. North Am. 2000; 84 (3): 597-607. DOI: 10.1016/S0025-7125(05)70243-1.

5. Terlizzi V., Centrone C., Botti M., Taccetti G. G378X-I148T CFTR variant: a new complex allele in a cystic fibrosis newborn with pancreatic insufficiency. Mol. Genet. Genomic Med. 2022; 10 (9): e2033. DOI: 10.1002/mgg3.2033.

6. Wei L., Vankeerberghen A., Jaspers M. et al. Suppressive interactions between mutations located in the two nucleotide binding domains of CFTR. FEBSLett. 2000; 473 (2): 149-153. DOI: 10.1016/S0014-5793(00)01519-2.

7. El-Seedy A., Girodon E., Norez C. et al. CFTR mutation combinations producing frequent complex alleles with different clinical and functional outcomes. Hum. Mutat. 2012; 33 (11): 1557-1565. DOI: 10.1002/humu.22129.

8. Bienvenu T., Lopez M., Girodon E. Molecular diagnosis and genetic counseling of cystic fibrosis and related disorders: new challenges. Genes (Basel). 2020; 11 (6): 619. DOI: 10.3390/genes11060619.

9. Kondratyeva E.I., Krasovskiy S.A., Starinova M.A. et al., eds. [Register of patients with cystic fibrosis in the Russian Federation. 2020]. Moscow: Medpraktika-M; 2022. Available at: http://ostrovaru.com/site_Registre_2020.pdf (in Russian).

10. Kondratyeva E.I., Petrova N.V., Krasovskiy SA. et al. [Cystic fibrosis phenotype with the complex allele s466x-r1070q in Russian Federation]. Pul’monologiya. 2017; 27 (6): 695-703. DOI: 10.18093/0869-0189-2017-27-6-695-703 (in Russian).

11. Krasnov K.V., Tzetis M., Cheng J. et al. Functional studies of rare missense mutations in CFTR facilitate interpretation of genotype-phenotype relationships. Hum. Mutat. 2008; 29 (11): 1364-1372. DOI: 10.1002/humu.20866.

12. Petrova N., Kashirskaya N., Zinchenko R. et al. Genotype-phenotype correlation in Russian cystic fibrosis patients with S466X-R1070Q complex allele. J. Cyst. Fibros. 2015; 14 (Suppl. 1): S42. DOI: 10.1016/S1569-1993(15)30133-8.

13. Cholon D.M., Quinney N.L., Fulcher M.L. et al. Potentiator iva-caftor abrogates pharmacological correction of AF508 CFTR in cystic fibrosis. Sci. Transl. Med. 2014; 6 (246): 246ra96. DOI: 10.1126/scitranslmed.3008680.

14. Chevalier B., Hinzpeter A. The influence of CFTR complex alleles on precision therapy of cystic fibrosis. J. Cyst. Fibros. 2020; 19 (Suppl. 1): S15-18. DOI: 10.1016/j.jcf.2019.12.008.

15. Kondratyeva E., Bulatenko N., Melyanovskaya Y. et al. Personalized selection of a CFTR modulator for a patient with a complex allele [L467F;F508del]. Curr. Issues Mol. Biol. 2022; 44 (10): 5126-538. DOI: 10.3390/cimb44100349.

16. Beekman J.M. Individualized medicine using intestinal responses to CFTR potentiators and correctors. Pediatr. Pulmonol. 2016; 51 (Suppl. 44): S23-34. DOI: 10.1002/ppul.23553.

17. Derichs N., Sanz J., Von Kanel T. et al. Intestinal current measurement for diagnostic classification of patients with questionable cystic fibrosis: validation and reference data. Thorax. 2010; 65 (7): 594-599. DOI: 10.1136/thx.2009.125088.

18. Melyanovskaya Yu.L., Kondratyeva E.I. Kutsev S.I. [Determination of reference values for the method of intestinal current measurement in the Russian Federation]. Meditsinskiy vestnik Severnogo Kavkaza. 2020; 15 (2): 162-166. DOI: 10.14300/mnnc.2020.15039 (in Russian).

19. Dekkers J.F., van der Ent C.K., Beekman J.M. Novel opportunities for CFTR-targeting drug development using organoids. Rare Dis. 2013; 1: e27112. DOI: 10.4161/rdis.27112.

20. Boj S.F., Vonk A.M., Statia M. et al. Forskolin-induced swelling in intestinal organoids: an in vitro assay for assessing drug response in cystic fibrosis patients. J. Vis. Exp. 2017; (120): 55159. DOI: 10.3791/55159.

21. Vonk A.M., van Mourik P., Ramalho A.S. et al. Protocol for application, standardization and validation of the forskolin-induced swelling assay in cystic fibrosis human colon organoids. STAR Protoc. 2020; 1 (1): 100019. DOI: 10.1016/j.xpro.2020.100019.

22. Kondratyeva E.I., Melyanovskaya Y.L., Efremova A.S. et al. [Experience of evaluating functionality of anionic cftr channel methods application in patients with cystic fibrosis diagnosed and supposed]. Sibirskoe meditsinskoe obozrenie. 2019; (2): 60-69. DOI: 10.20333/2500136-2019-2-60-69 (in Russian).

23. Dork T., Wulbrand U., Richter T. et al. Cystic fibrosis with three mutations in the cystic fibrosis transmembrane conductance regulator gene. Hum. Genet. 1991; 87 (4): 441-446. DOI: 10.1007/BF00197165.

24. Duarte A., Amaral M., Barreto C. et al. Complex cystic fibrosis allele R334W-R1158X results in reduced levels of correctly processed MRNA in a pancreatic sufficient patient. Hum. Mutat. 1996; 8 (2): 134-139. https://doi.org/10.1002/(SICI)1098-1004(1996)8:2<134::AID-HUMU5>3.0.CO;2-B

25. Ramalho A.S., Forstovd E., Vonk A.M. et al. Correction of CFTR function in intestinal organoids to guide treatment of cystic fibrosis. Eur. Respir. J. 2021; 57 (1): 1902426. DOI: 10.1183/13993003.02426-2019.


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For citations:


Krasnova M.G., Melianovskaya Yu.L., Krasovskiy S.A., Bulatenko N.V., Efremova A.S., Bukharova T.B., Goldshtein D.V. Description of the clinical picture and assessment of functional activity of the CFTR channel in a patient with a complex allele [S466X; R1070Q]. PULMONOLOGIYA. 2023;33(2):233-242. (In Russ.) https://doi.org/10.18093/0869-0189-2023-33-2-233-242

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ISSN 0869-0189 (Print)
ISSN 2541-9617 (Online)