<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Publishing DTD v1.3 20210610//EN" "JATS-journalpublishing1-3.dtd">
<article article-type="review-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">pulmo</journal-id><journal-title-group><journal-title xml:lang="ru">Пульмонология</journal-title><trans-title-group xml:lang="en"><trans-title>PULMONOLOGIYA</trans-title></trans-title-group></journal-title-group><issn pub-type="ppub">0869-0189</issn><issn pub-type="epub">2541-9617</issn><publisher><publisher-name>Scientific and Practical Journal “PULMONOLOGIYA” LLC</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.18093/0869-0189-2022-4144</article-id><article-id custom-type="elpub" pub-id-type="custom">pulmo-4144</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>ОБЗОРЫ</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>REVIEW</subject></subj-group></article-categories><title-group><article-title>Микрофлора легких: норма, патологии, влияние вакцинации</article-title><trans-title-group xml:lang="en"><trans-title>Microflora of the lungs in health and disease, the impact of vaccination</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-4806-050X</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Золотов</surname><given-names>М. О.</given-names></name><name name-style="western" xml:lang="en"><surname>Zolotov</surname><given-names>M. O.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Золотов Максим Олегович – кандидат медицинских наук, ассистент кафедры общей и клинической микробиологии, иммунологии и аллергологии.</p><p>443099, Самара, ул. Чапаевская, 89; тел.: (846) 374-10-04, доб. 457</p></bio><bio xml:lang="en"><p>Maxim O. Zolotov - Candidate of Medicine, Assistant, Department of General and Clinical Microbiology, Immunology and Allergology.</p><p>Ul. Chapaevskaya 89, Samara, 443099; tel.: (846) 374-10-04, ext. 457</p></bio><email xlink:type="simple">m.o.zolotov@gmail.com</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-3960-830X</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Жестков</surname><given-names>А. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Zhestkov</surname><given-names>A. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Жестков Александр Викторович – доктор медицинских наук, профессор, заведующий кафедрой общей и клинической микробиологии, иммунологии и аллергологии.</p><p>443099, Самара, ул. Чапаевская, 89; тел.: (846) 374-10-04, доб. 457</p></bio><bio xml:lang="en"><p>Alexander V. Zhestkov - Doctor of Medicine, Professor, Head of the Department of General and Clinical Microbiology, Immunology, and Allergology.</p><p>Ul. Chapaevskaya 89, Samara, 443099; tel.: (846) 374-10-04, ext. 457</p></bio><email xlink:type="simple">avzhestkov2015@yandex.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-5905-1895</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Лямин</surname><given-names>А. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Lyamin</surname><given-names>A. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Лямин Артем Викторович – доктор медицинских наук, профессор кафедры общей и клинической микробиологии, иммунологии и аллергологии.</p><p>443099, Самара, ул. Чапаевская, 89; тел.: (846) 374-10-04, доб. 457</p></bio><bio xml:lang="en"><p>Artem V. Lyamin - Doctor of Medicine, Professor, Department of General and Clinical Microbiology, Immunology, and Allergology.</p><p>Ul. Chapaevskaya 89, Samara, 443099; tel.: (846) 374-10-04, ext. 457</p></bio><email xlink:type="simple">avlyamin@rambler.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-4307-9321</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Федотов</surname><given-names>В. Д.</given-names></name><name name-style="western" xml:lang="en"><surname>Fedotov</surname><given-names>V. D.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Федотов Василий Дмитриевич – кандидат медицинских наук, доцент кафедры госпитальной терапии имени В.Г.Вогралика Федерального государственного бюджетного образовательного учреждения высшего образования «Приволжский исследовательский медицинский университет» Министерства здравоохранения Российской Федерации, старший научный сотрудник клинического отдела Нижегородский НИИГП Федеральной службы по надзору в сфере защиты прав потребителей и благополучия человека; главный внештатный пульмонолог министерства здравоохранения Нижегородской области.</p><p>603005, Нижний Новгород, пл. Минина и Пожарского, 10 / 1; 603105, Нижний Новгород, ул. Семашко, 20; тел.: (831) 419-61-94</p></bio><bio xml:lang="en"><p>Vasily D. Fedotov - Candidate of Medicine, Associate Professor, Department of Hospital Therapy named after V.G.Vogralik, Federal State Budgetary Educational Institution of Higher Education Privolzhsky Research Medical University, Senior Researcher, Clinical Department, Nizhny NSRIHygiene and Occupational Pathology” of the Federal Service for Supervision of Consumer Rights Protection and Human Wellbeing; Chief Freelance Pulmonologist of the Ministry of Health of the Nizhny Novgorod Region.</p><p>Pl. Minina i Pozharskogo 10/1, Nizhny Novgorod, 603005; ul. Semashko 20, Nizhny Novgorod, 603105; tel.: (831) 419-61-94</p></bio><email xlink:type="simple">basil11@yandex.ru</email><xref ref-type="aff" rid="aff-2"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru"><institution>Федеральное государственное бюджетное образовательное учреждение высшего образования «Самарский государственный медицинский университет» Министерства здравоохранения Российской Федерации</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Federal State Budgetary Educational Institution of Higher Education “Samara State Medical University” of the Ministry of Healthcare of the Russian Federation</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-2"><aff xml:lang="ru"><institution>Федеральное государственное бюджетное образовательное учреждение высшего образования «Приволжский исследовательский медицинский университет» Министерства здравоохранения Российской Федерации; Федеральное бюджетное учреждение науки «Нижегородский научно-исследовательский институт гигиены и профпатологии» Федеральной службы по надзору в сфере защиты прав потребителей и благополучия человека</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Federal State Budgetary Educational Institution of Higher Education “Privolzhsky Research Medical University” of the Ministry of Health of the Russian Federation; Federal Budgetary Scientific Institution “Nizhny Novgorod Research Institute for Hygiene and Occupational Pathology”, Federal Service for Supervision of Consumer Rights Protection and Human Welfare</institution><country>Russian Federation</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2023</year></pub-date><pub-date pub-type="epub"><day>13</day><month>12</month><year>2023</year></pub-date><volume>33</volume><issue>6</issue><fpage>792</fpage><lpage>797</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Золотов М.О., Жестков А.В., Лямин А.В., Федотов В.Д., 2023</copyright-statement><copyright-year>2023</copyright-year><copyright-holder xml:lang="ru">Золотов М.О., Жестков А.В., Лямин А.В., Федотов В.Д.</copyright-holder><copyright-holder xml:lang="en">Zolotov M.O., Zhestkov A.V., Lyamin A.V., Fedotov V.D.</copyright-holder><license xml:lang="ru" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>Данная работа распространяется под лицензией Creative Commons Attribution 4.0.</license-p></license><license xml:lang="en" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://journal.pulmonology.ru/pulm/article/view/4144">https://journal.pulmonology.ru/pulm/article/view/4144</self-uri><abstract><p>Разработка новых методов диагностики инфекционных заболеваний, таких как полимеразная цепная реакция, секвенирование и массспектрометрия, позволила расширить представление о микрофлоре различных локусов организма человека в целом и респираторного тракта в частности. В легких наиболее распространены представители Proteobacteria (Pseudomonas spp., Haemophilus spp.), Bacteriodetes (Prevotella spp., Porphyromonas spp.) и Firmicutes (Veillonella spp., Streptococcus spp.). Формирование патологического процесса в нижних дыхательных путях приводит к изменению их микробиома. Так, у пациентов с хронической обструктивной болезнью легких обнаруживаются микроорганизмы родов Moraxella, Haemophilus и Acinetobacter. К основным возбудителям внебольничной пневмонии (ВП) относятся Streptococcus pneumoniae, Staphylococcus aureus, Haemophilus influenzae, Klebsiella pneumoniae и другие энтеробактерии. Атипичные возбудители пневмонии представлены Mycoplasma pneumoniae, Chlamydia pneumoniae и Legionella pneumophila. Широкая распространенность S. pneumoniae в популяции подтверждает необходимость применения вакцин для профилактики развития инвазивных и неинвазивных форм инфекции.</p><p>Целью исследования явился анализ данных литературы о структуре нормальной микрофлоры легких и изучение ее роли в развитии патологических состояний.</p><p>Заключение. Все больше исследований подтверждают важную роль нормальной микрофлоры дыхательных путей. Применение вакцинации для профилактики болезней бронхолегочной системы позволяет снизить заболеваемость и смертность от пневмонии. Однако проблема ВП не теряет своей актуальности, в частности, представляет большой интерес динамика изменений структуры возбудителей этого заболевания. Проведение вакцинопрофилактики против респираторных патогенов в совокупности с бесконтрольным приемом антибактериальных препаратов во время пандемии новой коронавирусной инфекции могли способствовать изменению как структуры микрофлоры нижних дыхательных путей в целом, так и возбудителей бактериальной ВП в частности. Выявление изменения доминирующего возбудителя влечет за собой необходимость пересмотра этиотропного лечения и организации плановой профилактики при наличии соответствующих вакцин.</p></abstract><trans-abstract xml:lang="en"><p>The development of new methods for diagnosing infectious diseases, such as polymerase chain reaction, sequencing, and mass spectrometry, has made it possible to expand our understanding of the microflora of the human body in general and of the respiratory tract in particular. The most common microorganisms in lungs include Proteobacteria (Pseudomonas spp., Haemophilus spp.), Bacteriodetes (Prevotella spp., Porphyromonas spp.) and Firmicutes (Veillonella spp., Streptococcus spp.). Pathological processes in the lower respiratory tract change the microbiome. Consequently, Moraxella, Haemophilus, and Acinetobacter microorganisms are found in patients with chronic obstructive pulmonary disease. The main causative agents of community-acquired pneumonia include Streptococcus pneumoniae, Staphylococcus aureus, Haemophilus influenzae, Klebsiella pneumoniae and other enterobacteria. Atypical causative agents of pneumonia include Mycoplasma pneumoniae, Chlamydia pneumoniae, and Legionella pneumophila. The wide prevalence of S. pneumoniae in the population confirms the need for vaccines to prevent the development of invasive and noninvasive forms of infection.</p><p>The aim of the study was to analyze literature data on the structure of the normal microflora of the lung and to investigate its role in the development of pathological conditions.</p><p>Conclusion. A growing body of research confirms the important role of the normal microflora of the respiratory tract. Vaccination against diseases of the bronchopulmonary system may reduce the incidence and mortality of pneumonia. However, the problem of community-acquired pneumonia is still relevant. In particular, the changes in the structure of the pathogens of this disease is of great interest. Vaccination against respiratory pathogens in combination with uncontrolled use of antibiotics during the pandemic of the new coronavirus infection could contribute to a change in the structure of both the lower respiratory microflora in general and the pathogens of bacterial community-acquired pneumonia in particular. The detection of a change in the predominant pathogen calls for revising etiotropic treatment and organizing planned prophylaxis if the appropriate vaccines are available.</p></trans-abstract><kwd-group xml:lang="ru"><kwd>микрофлора легких</kwd><kwd>вакцинация</kwd><kwd>Streptococcus pneumoniae</kwd><kwd>пневмония</kwd><kwd>энтеробактерии</kwd></kwd-group><kwd-group xml:lang="en"><kwd>microflora of the lungs</kwd><kwd>vaccination</kwd><kwd>Streptococcus pneumoniae</kwd><kwd>pneumonia</kwd><kwd>enterobacteria</kwd></kwd-group><funding-group><funding-statement xml:lang="ru">Спонсорская поддержка отсутствовала</funding-statement><funding-statement xml:lang="en">The study was not sponsored</funding-statement></funding-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Segal L.N., Alekseyenko A.V., Clemente J.C. et al. Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation. Microbiome. 2013; 1 (1): 19. https://doi.org/10.1186/2049-2618-1-19.</mixed-citation><mixed-citation xml:lang="en">Segal L.N., Alekseyenko A.V., Clemente J.C. et al. Enrichment of lung microbiome with supraglottic taxa is associated with increased pulmonary inflammation. Microbiome. 2013; 1 (1): 19. https://doi.org/10.1186/2049-2618-1-19.</mixed-citation></citation-alternatives></ref><ref id="cit2"><label>2</label><citation-alternatives><mixed-citation xml:lang="ru">Man W.H., de Steenhuijsen Piters W.A., Bogaert D. The microbiota of the respiratory tract: gatekeeper to respiratory health. Nat. Rev. Microbiol. 2017; 15 (5): 259-270. https://doi.org/10.1038/nrmicro.2017.14.</mixed-citation><mixed-citation xml:lang="en">Man W.H., de Steenhuijsen Piters W.A., Bogaert D. The microbiota of the respiratory tract: gatekeeper to respiratory health. Nat. Rev. Microbiol. 2017; 15 (5): 259-270. https://doi.org/10.1038/nrmicro.2017.14.</mixed-citation></citation-alternatives></ref><ref id="cit3"><label>3</label><citation-alternatives><mixed-citation xml:lang="ru">Moffatt M.F., Cookson W.O. The lung microbiome in health and disease. Clin. Med. (Lond.). 2017; 17 (6): 525-529. https://doi.org/10.7861/clinmedicine.17-6-525.</mixed-citation><mixed-citation xml:lang="en">Moffatt M.F., Cookson W.O. The lung microbiome in health and disease. Clin. Med. (Lond.). 2017; 17 (6): 525-529. https://doi.org/10.7861/clinmedicine.17-6-525.</mixed-citation></citation-alternatives></ref><ref id="cit4"><label>4</label><citation-alternatives><mixed-citation xml:lang="ru">Charlson E.S., Bittinger K., Chen J. et al. Assessing bacterial populations in the lung by replicate analysis of samples from the upper and lower respiratory tracts. PLoS One. 2012; 7 (9): e42786. https://doi.org/10.1371/journal.pone.0042786.</mixed-citation><mixed-citation xml:lang="en">Charlson E.S., Bittinger K., Chen J. et al. Assessing bacterial populations in the lung by replicate analysis of samples from the upper and lower respiratory tracts. PLoS One. 2012; 7 (9): e42786. https://doi.org/10.1371/journal.pone.0042786.</mixed-citation></citation-alternatives></ref><ref id="cit5"><label>5</label><citation-alternatives><mixed-citation xml:lang="ru">Charlson E.S., Bittinger K., Haas A.R. et al. Topographical continuity of bacterial populations in the healthy human respiratory tract. Am. J. Respir. Crit. Care Med. 2011; 184 (8): 957-963. https://doi.org/10.1164/rccm.201104-0655OC.</mixed-citation><mixed-citation xml:lang="en">Charlson E.S., Bittinger K., Haas A.R. et al. Topographical continuity of bacterial populations in the healthy human respiratory tract. Am. J. Respir. Crit. Care Med. 2011; 184 (8): 957-963. https://doi.org/10.1164/rccm.201104-0655OC.</mixed-citation></citation-alternatives></ref><ref id="cit6"><label>6</label><citation-alternatives><mixed-citation xml:lang="ru">Bassis C.M., Erb-Downward J.R., Dickson R.P. et al. Analysis of the upper respiratory tract microbiotas as the source of the lung and gastric microbiotas in healthy individuals. mBio. 2015; 6 (2): e00037. https://doi.org/10.1128/mBio.00037-15.</mixed-citation><mixed-citation xml:lang="en">Bassis C.M., Erb-Downward J.R., Dickson R.P. et al. Analysis of the upper respiratory tract microbiotas as the source of the lung and gastric microbiotas in healthy individuals. mBio. 2015; 6 (2): e00037. https://doi.org/10.1128/mBio.00037-15.</mixed-citation></citation-alternatives></ref><ref id="cit7"><label>7</label><citation-alternatives><mixed-citation xml:lang="ru">Huffnagle G.B., Dickson R.P., Lukacs N.W. The respiratory tract microbiome and lung inflammation: a two-way street. Mucosal Immunol. 2017; 10 (2): 299-306. https://doi.org/10.1038/mi.2016.108.</mixed-citation><mixed-citation xml:lang="en">Huffnagle G.B., Dickson R.P., Lukacs N.W. The respiratory tract microbiome and lung inflammation: a two-way street. Mucosal Immunol. 2017; 10 (2): 299-306. https://doi.org/10.1038/mi.2016.108.</mixed-citation></citation-alternatives></ref><ref id="cit8"><label>8</label><citation-alternatives><mixed-citation xml:lang="ru">Brunworth J.D., Garg R., Mahboubi H. et al. Detecting nasopharyngeal reflux: a novel pH probe technique. Ann. Otol. Rhinol. Laryngol. 2012; 121 (7): 427-430. https://doi.org/10.1177/000348941212100701.</mixed-citation><mixed-citation xml:lang="en">Brunworth J.D., Garg R., Mahboubi H. et al. Detecting nasopharyngeal reflux: a novel pH probe technique. Ann. Otol. Rhinol. Laryngol. 2012; 121 (7): 427-430. https://doi.org/10.1177/000348941212100701.</mixed-citation></citation-alternatives></ref><ref id="cit9"><label>9</label><citation-alternatives><mixed-citation xml:lang="ru">Keck T., Lindemann J. Numerical simulation and nasal air-conditioning. GMS Curr. Top. Otorhinolaryngol. Head Neck Surg. 2010; 9: Doc08. https://doi.org/10.3205/cto000072.</mixed-citation><mixed-citation xml:lang="en">Keck T., Lindemann J. Numerical simulation and nasal air-conditioning. GMS Curr. Top. Otorhinolaryngol. Head Neck Surg. 2010; 9: Doc08. https://doi.org/10.3205/cto000072.</mixed-citation></citation-alternatives></ref><ref id="cit10"><label>10</label><citation-alternatives><mixed-citation xml:lang="ru">Hatch T.F. Distribution and deposition of inhaled particles in respiratory tract. Bacteriol. Rev. 1961; 25 (3): 237-240. https://doi.org/10.1128/br.25.3.237-240.1961.</mixed-citation><mixed-citation xml:lang="en">Hatch T.F. Distribution and deposition of inhaled particles in respiratory tract. Bacteriol. Rev. 1961; 25 (3): 237-240. https://doi.org/10.1128/br.25.3.237-240.1961.</mixed-citation></citation-alternatives></ref><ref id="cit11"><label>11</label><citation-alternatives><mixed-citation xml:lang="ru">Ubags N.D.J., Marsland B.J. Mechanistic insight into the function of the microbiome in lung diseases. Eur. Respir. J. 2017; 50 (3): 1602467. https://doi.org/10.1183/13993003.02467-2016.</mixed-citation><mixed-citation xml:lang="en">Ubags N.D.J., Marsland B.J. Mechanistic insight into the function of the microbiome in lung diseases. Eur. Respir. J. 2017; 50 (3): 1602467. https://doi.org/10.1183/13993003.02467-2016.</mixed-citation></citation-alternatives></ref><ref id="cit12"><label>12</label><citation-alternatives><mixed-citation xml:lang="ru">Segal L.N., Rom W.N., Weiden M.D. Lung microbiome for clinicians. New discoveries about bugs in healthy and diseased lungs. Ann. Am. Thorac. Soc. 2014; 11 (1): 108-116. https://doi.org/10.1513/AnnalsATS.201310-339FR.</mixed-citation><mixed-citation xml:lang="en">Segal L.N., Rom W.N., Weiden M.D. Lung microbiome for clinicians. New discoveries about bugs in healthy and diseased lungs. Ann. Am. Thorac. Soc. 2014; 11 (1): 108-116. https://doi.org/10.1513/AnnalsATS.201310-339FR.</mixed-citation></citation-alternatives></ref><ref id="cit13"><label>13</label><citation-alternatives><mixed-citation xml:lang="ru">Fujimura K.E., Demoor T., Rauch M. et al. House dust exposure mediates gut microbiome Lactobacillus enrichment and airway immune defense against allergens and virus infection. Proc. Natl. Acad. Sci. USA. 2014; 111 (2): 805-810. https://doi.org/10.1073/pnas.1310750111.</mixed-citation><mixed-citation xml:lang="en">Fujimura K.E., Demoor T., Rauch M. et al. House dust exposure mediates gut microbiome Lactobacillus enrichment and airway immune defense against allergens and virus infection. Proc. Natl. Acad. Sci. USA. 2014; 111 (2): 805-810. https://doi.org/10.1073/pnas.1310750111.</mixed-citation></citation-alternatives></ref><ref id="cit14"><label>14</label><citation-alternatives><mixed-citation xml:lang="ru">Wang J., Li F., Wei H. et al. Respiratory influenza virus infection induces intestinal immune injury via microbiota-mediated Th17 cell-dependent inflammation. J. Exp. Med. 2014; 211 (12): 2397-2410. https://doi.org/10.1084/jem.20140625.</mixed-citation><mixed-citation xml:lang="en">Wang J., Li F., Wei H. et al. Respiratory influenza virus infection induces intestinal immune injury via microbiota-mediated Th17 cell-dependent inflammation. J. Exp. Med. 2014; 211 (12): 2397-2410. https://doi.org/10.1084/jem.20140625.</mixed-citation></citation-alternatives></ref><ref id="cit15"><label>15</label><citation-alternatives><mixed-citation xml:lang="ru">Wu B.G., Sulaiman I., Tsay J.J. et al. Episodic aspiration with oral commensals Induces a MyD88-dependent, pulmonary T-helper cell type 17 response that mitigates susceptibility to Streptococcus pneumoniae. Am. J. Respir. Crit. Care Med. 2021; 203 (9): 1099-1111. https://doi.org/10.1164/rccm.202005-1596OC.</mixed-citation><mixed-citation xml:lang="en">Wu B.G., Sulaiman I., Tsay J.J. et al. Episodic aspiration with oral commensals Induces a MyD88-dependent, pulmonary T-helper cell type 17 response that mitigates susceptibility to Streptococcus pneumoniae. Am. J. Respir. Crit. Care Med. 2021; 203 (9): 1099-1111. https://doi.org/10.1164/rccm.202005-1596OC.</mixed-citation></citation-alternatives></ref><ref id="cit16"><label>16</label><citation-alternatives><mixed-citation xml:lang="ru">Nembrini C., Sichelstiel A., Kisielow J. et al. Bacterial-induced protection against allergic inflammation through a multicomponent immunoregulatory mechanism. Thorax. 2011; 66 (9): 755-763. https://doi.org/10.1136/thx.2010.152512.</mixed-citation><mixed-citation xml:lang="en">Nembrini C., Sichelstiel A., Kisielow J. et al. Bacterial-induced protection against allergic inflammation through a multicomponent immunoregulatory mechanism. Thorax. 2011; 66 (9): 755-763. https://doi.org/10.1136/thx.2010.152512.</mixed-citation></citation-alternatives></ref><ref id="cit17"><label>17</label><citation-alternatives><mixed-citation xml:lang="ru">Ege M.J., Mayer M., Normand A.C. et al. Exposure to environmental microorganisms and childhood asthma. N. Engl. J. Med. 2011; 364 (8): 701-709. https://doi.org/10.1056/NEJMoa1007302.</mixed-citation><mixed-citation xml:lang="en">Ege M.J., Mayer M., Normand A.C. et al. Exposure to environmental microorganisms and childhood asthma. N. Engl. J. Med. 2011; 364 (8): 701-709. https://doi.org/10.1056/NEJMoa1007302.</mixed-citation></citation-alternatives></ref><ref id="cit18"><label>18</label><citation-alternatives><mixed-citation xml:lang="ru">Ege M.J., Bieli C., Frei R. et al. Prenatal farm exposure is related to the expression of receptors of the innate immunity and to atopic sensitization in school-age children. J. Allergy Clin. Immunol. 2006; 117 (4): 817-823. https://doi.org/10.1016/j.jaci.2005.12.1307.</mixed-citation><mixed-citation xml:lang="en">Ege M.J., Bieli C., Frei R. et al. Prenatal farm exposure is related to the expression of receptors of the innate immunity and to atopic sensitization in school-age children. J. Allergy Clin. Immunol. 2006; 117 (4): 817-823. https://doi.org/10.1016/j.jaci.2005.12.1307.</mixed-citation></citation-alternatives></ref><ref id="cit19"><label>19</label><citation-alternatives><mixed-citation xml:lang="ru">Roduit C., Wohlgensinger J., Frei R. et al. Prenatal animal contact and gene expression of innate immunity receptors at birth are associated with atopic dermatitis. J. Allergy Clin. Immunol. 2011; 127 (1): 179-185. https://doi.org/10.1016/j.jaci.2010.10.010.</mixed-citation><mixed-citation xml:lang="en">Roduit C., Wohlgensinger J., Frei R. et al. Prenatal animal contact and gene expression of innate immunity receptors at birth are associated with atopic dermatitis. J. Allergy Clin. Immunol. 2011; 127 (1): 179-185. https://doi.org/10.1016/j.jaci.2010.10.010.</mixed-citation></citation-alternatives></ref><ref id="cit20"><label>20</label><citation-alternatives><mixed-citation xml:lang="ru">Marsland B.J., Trompette A., Gollwitzer E.S. The gut-lung axis in respiratory disease. Ann. Am. Thorac. Soc. 2015; 12 (Suppl. 2): S150-156. https://doi.org/10.1513/AnnalsATS.201503-133AW.</mixed-citation><mixed-citation xml:lang="en">Marsland B.J., Trompette A., Gollwitzer E.S. The gut-lung axis in respiratory disease. Ann. Am. Thorac. Soc. 2015; 12 (Suppl. 2): S150-156. https://doi.org/10.1513/AnnalsATS.201503-133AW.</mixed-citation></citation-alternatives></ref><ref id="cit21"><label>21</label><citation-alternatives><mixed-citation xml:lang="ru">McKenzie A.N. Type-2 innate lymphoid cells in asthma and allergy. Ann. Am. Thorac. Soc. 2014; 11 (Suppl. 5): S263-270. https://doi.org/10.1513/annalsats.201403-097aw.</mixed-citation><mixed-citation xml:lang="en">McKenzie A.N. Type-2 innate lymphoid cells in asthma and allergy. Ann. Am. Thorac. Soc. 2014; 11 (Suppl. 5): S263-270. https://doi.org/10.1513/annalsats.201403-097aw.</mixed-citation></citation-alternatives></ref><ref id="cit22"><label>22</label><citation-alternatives><mixed-citation xml:lang="ru">Molyneaux P.L., Mallia P., Cox M.J. et al. Outgrowth of the bacterial airway microbiome after rhinovirus exacerbation of chronic obstructive pulmonary disease. Am. J. Respir. Crit. Care Med. 2013; 188 (10): 1224-1231. https://doi.org/10.1164/rccm.201302-0341OC.</mixed-citation><mixed-citation xml:lang="en">Molyneaux P.L., Mallia P., Cox M.J. et al. Outgrowth of the bacterial airway microbiome after rhinovirus exacerbation of chronic obstructive pulmonary disease. Am. J. Respir. Crit. Care Med. 2013; 188 (10): 1224-1231. https://doi.org/10.1164/rccm.201302-0341OC.</mixed-citation></citation-alternatives></ref><ref id="cit23"><label>23</label><citation-alternatives><mixed-citation xml:lang="ru">Lynch S.V., Bruce K.D. The cystic fibrosis airway microbiome. Cold Spring Harb. Perspect. Med. 2013; 3 (3): a009738. https://doi.org/10.1101/cshperspect.a009738.</mixed-citation><mixed-citation xml:lang="en">Lynch S.V., Bruce K.D. The cystic fibrosis airway microbiome. Cold Spring Harb. Perspect. Med. 2013; 3 (3): a009738. https://doi.org/10.1101/cshperspect.a009738.</mixed-citation></citation-alternatives></ref><ref id="cit24"><label>24</label><citation-alternatives><mixed-citation xml:lang="ru">Prevaes S.M., de Steenhuijsen Piters W.A., de Winter-de Groot K.M. et al. Concordance between upper and lower airway microbiota in infants with cystic fibrosis. Eur. Respir. J. 2017; 49 (3):1602235. https://doi.org/10.1183/13993003.02235-2016.</mixed-citation><mixed-citation xml:lang="en">Prevaes S.M., de Steenhuijsen Piters W.A., de Winter-de Groot K.M. et al. Concordance between upper and lower airway microbiota in infants with cystic fibrosis. Eur. Respir. J. 2017; 49 (3):1602235. https://doi.org/10.1183/13993003.02235-2016.</mixed-citation></citation-alternatives></ref><ref id="cit25"><label>25</label><citation-alternatives><mixed-citation xml:lang="ru">Coburn B., Wang P.W., Diaz Caballero J. et al. Lung microbiota across age and disease stage in cystic fibrosis. Sci. Rep. 2015; 5: 10241. https://doi.org/10.1038/srep10241.</mixed-citation><mixed-citation xml:lang="en">Coburn B., Wang P.W., Diaz Caballero J. et al. Lung microbiota across age and disease stage in cystic fibrosis. Sci. Rep. 2015; 5: 10241. https://doi.org/10.1038/srep10241.</mixed-citation></citation-alternatives></ref><ref id="cit26"><label>26</label><citation-alternatives><mixed-citation xml:lang="ru">Huffnagle G.B., Dickson R.P. The bacterial microbiota in inflammatory lung diseases. Clin. Immunol. 2015; 159 (2): 177-182. https://doi.org/10.1016/j.clim.2015.05.022.</mixed-citation><mixed-citation xml:lang="en">Huffnagle G.B., Dickson R.P. The bacterial microbiota in inflammatory lung diseases. Clin. Immunol. 2015; 159 (2): 177-182. https://doi.org/10.1016/j.clim.2015.05.022.</mixed-citation></citation-alternatives></ref><ref id="cit27"><label>27</label><citation-alternatives><mixed-citation xml:lang="ru">Dickson R.P., Erb-Downward J.R., Huffnagle G.B. Towards an ecology of the lung: new conceptual models of pulmonary microbiology and pneumonia pathogenesis. Lancet Respir. Med. 2014; 2 (3): 238-246. https://doi.org/10.1016/S2213-2600(14)70028-1.</mixed-citation><mixed-citation xml:lang="en">Dickson R.P., Erb-Downward J.R., Huffnagle G.B. Towards an ecology of the lung: new conceptual models of pulmonary microbiology and pneumonia pathogenesis. Lancet Respir. Med. 2014; 2 (3): 238-246. https://doi.org/10.1016/S2213-2600(14)70028-1.</mixed-citation></citation-alternatives></ref><ref id="cit28"><label>28</label><citation-alternatives><mixed-citation xml:lang="ru">Angus D.C., van der Poll T. Severe sepsis and septic shock. N. Engl. J. Med. 2013; 369 (9): 840-851. https://doi.org/10.1056/NEJMra1208623.</mixed-citation><mixed-citation xml:lang="en">Angus D.C., van der Poll T. Severe sepsis and septic shock. N. Engl. J. Med. 2013; 369 (9): 840-851. https://doi.org/10.1056/NEJMra1208623.</mixed-citation></citation-alternatives></ref><ref id="cit29"><label>29</label><citation-alternatives><mixed-citation xml:lang="ru">Flume P.A., Chalmers J.D., Olivier K.N. Advances in bronchiectasis: endotyping, genetics, microbiome, and disease heterogeneity. Lancet. 2018; 392 (10150): 880-890. https://doi.org/10.1016/S0140-6736(18)31767-7.</mixed-citation><mixed-citation xml:lang="en">Flume P.A., Chalmers J.D., Olivier K.N. Advances in bronchiectasis: endotyping, genetics, microbiome, and disease heterogeneity. Lancet. 2018; 392 (10150): 880-890. https://doi.org/10.1016/S0140-6736(18)31767-7.</mixed-citation></citation-alternatives></ref><ref id="cit30"><label>30</label><citation-alternatives><mixed-citation xml:lang="ru">Aksamit T.R., O’Donnell A.E., Barker A. et al. Adult patients with bronchiectasis: a first look at the US bronchiectasis research registry. Chest. 2017; 151 (5): 982-992. https://doi.org/10.1016/j.chest.2016.10.055.</mixed-citation><mixed-citation xml:lang="en">Aksamit T.R., O’Donnell A.E., Barker A. et al. Adult patients with bronchiectasis: a first look at the US bronchiectasis research registry. Chest. 2017; 151 (5): 982-992. https://doi.org/10.1016/j.chest.2016.10.055.</mixed-citation></citation-alternatives></ref><ref id="cit31"><label>31</label><citation-alternatives><mixed-citation xml:lang="ru">Ferreira-Coimbra J., Sarda C., Rello J. Burden of community-acquired pneumonia and unmet clinical needs. Adv. Ther. 2020; 37 (4): 1302-1318. https://doi.org/10.1007/s12325-020-01248-7.</mixed-citation><mixed-citation xml:lang="en">Ferreira-Coimbra J., Sarda C., Rello J. Burden of community-acquired pneumonia and unmet clinical needs. Adv. Ther. 2020; 37 (4): 1302-1318. https://doi.org/10.1007/s12325-020-01248-7.</mixed-citation></citation-alternatives></ref><ref id="cit32"><label>32</label><citation-alternatives><mixed-citation xml:lang="ru">Kolditz M., Ewig S. Community-acquired pneumonia in adults. Dtsch. Arztebl. Int. 2017; 114 (49): 838-848. https://doi.org/10.3238/arztebl.2017.0838.</mixed-citation><mixed-citation xml:lang="en">Kolditz M., Ewig S. Community-acquired pneumonia in adults. Dtsch. Arztebl. Int. 2017; 114 (49): 838-848. https://doi.org/10.3238/arztebl.2017.0838.</mixed-citation></citation-alternatives></ref><ref id="cit33"><label>33</label><citation-alternatives><mixed-citation xml:lang="ru">Невзорова В.А., Туркутюков В.Б., Мартыненко И.М. и др. Микробиологические аспекты диагностики внебольничной пневмонии. Бюллетень физиологии и патологии дыхания. 2004; (18): 15-17. Доступно на: https://cyberleninka.ru/article/n/mikrobiologicheskie-aspekty-diagnostiki-vnebolnichnoy-pnevmonii/viewer.</mixed-citation><mixed-citation xml:lang="en">Nevzorova V.A., Turkutyukov V.B., Martynenko I.M. et al. [Microbiological aspects of outpatient pneumonia diagnostics]. Byulleten’ fiziologii i patologii dykhaniya. 2004; (18): 15-17. Available at: https://cyberleninka.ru/article/n/mikrobiologicheskie-aspekty-diagnostiki-vnebolnichnoy-pnevmonii/viewer (in Russian).</mixed-citation></citation-alternatives></ref><ref id="cit34"><label>34</label><citation-alternatives><mixed-citation xml:lang="ru">Бруснигина Н.Ф., Мазепа В.Н., Самохина Л.П. и др. Этиологическая структура внебольничной пневмонии. Медицинский альманах. 2009; 7 (2): 118-121. Доступно на: https://cyberleninka.ru/article/n/etiologicheskaya-struktura-vnebolnichnoy-pnevmonii?ysclid=l9zd81fvx139158914.</mixed-citation><mixed-citation xml:lang="en">Brusnigina N.F., Mazepa V.N., Samokhina L.P. et al. [Etiological structure of community-acquired pneumonia]. Meditsinskiy al’manakh. 2009; 7 (2): 118-121. Available at: https://cyberleninka.ru/article/n/etiologicheskaya-struktura-vnebolnichnoy-pnevmonii?ysclid=l9zd81fvx139158914 (in Russian).</mixed-citation></citation-alternatives></ref><ref id="cit35"><label>35</label><citation-alternatives><mixed-citation xml:lang="ru">Чучалин А.Г., Синопальников А.И., Козлов Р.С. и др. Российское респираторное общество (РРО), Межрегиональная ассоциация по клинической микробиологии и антимикробной химиотерапии (МАКМАХ). Клинические рекомендации по диагностике, лечению и профилактике тяжелой внебольничной пневмонии у взрослых. Пульмонология. 2014; (4): 13-48. https://doi.org/10.18093/0869-0189-2014-0-4-13-48.</mixed-citation><mixed-citation xml:lang="en">Chuchalin A.G., Sinopal’nikov A.I., Kozlov R.S. et al. [Russian Respiratory Society (RRS), Interregional association for clinical microbiology and antimicrobial chemotherapy (IACMAC). Clinical guidelines for the diagnosis, treatment and prevention of severe community-acquired pneumonia in adults]. Pul’monologiya. 2014; (4): 13-48. https://doi.org/10.18093/0869-0189-2014-0-4-13-48 (in Russian).</mixed-citation></citation-alternatives></ref><ref id="cit36"><label>36</label><citation-alternatives><mixed-citation xml:lang="ru">Куликов П.В., Жоголев С.Д., Аминев Р.М. и др. Эпидемиологическая и этиологическая характеристика внебольничной пневмонии у военнослужащих по призыву в современный период. Сравнительная оценка эффективности пневмококковых вакцин. Журнал инфектологии. 2019; 11 (2): 116-123. https://doi.org/10.22625/2072-6732-2019-11-2-116-123.</mixed-citation><mixed-citation xml:lang="en">Kulikov P.V., Zhogolev S.D., Aminev R.M. et al. [Epidemiological and etiological characteristics of community-acquired pneumonia in military conscripts in the modern period. Comparative evaluation of the effectiveness of pneumococcal vaccines]. Zhurnal infektologii. 2019; 11 (2): 116-123. https://doi.org/10.22625/2072-6732-2019-11-2-116-123 (in Russian).</mixed-citation></citation-alternatives></ref><ref id="cit37"><label>37</label><citation-alternatives><mixed-citation xml:lang="ru">Авдеев С.Н., Дехнич А.В., Зайцев А.А. и др. Внебольничная пневмония: федеральные клинические рекомендации по диагностике и лечению. Пульмонология. 2022; 32 (3): 295-355. https://doi.org/10.18093/0869-0189-2022-32-3-295-355.</mixed-citation><mixed-citation xml:lang="en">Avdeev S.N., Dekhnich A.V., Zaytsev A.A. et al. [Federal guidelines on diagnosis and treatment of community-acquired pneumonia]. Pul’monologiya. 2022; 32 (3): 295-355. https://doi.org/10.18093/0869-0189-2022-32-3-295-355 (in Russian).</mixed-citation></citation-alternatives></ref><ref id="cit38"><label>38</label><citation-alternatives><mixed-citation xml:lang="ru">Герасимова А.С., Челбаева Е.А., Тарасеева Г.Н., Олейников В.Э. Структура бактериальных возбудителей и рациональная фармакотерапия внебольничной пневмонии. Известия высших учебных заведений. Поволжский регион. Медицинские науки. 2016; 40 (4): 40-50. https://doi.org/10.21685/2072-3032-2016-4-5.</mixed-citation><mixed-citation xml:lang="en">Gerasimova A.S., Chelbayeva Ye.A., Taraseyeva G.N., Oleynikov V.E. [The structure of bacterial pathogens and rational pharmacotherapy of community-acquired pneumonia]. Izvestiya vysshikh uchebnykh zavedeniy. Povolzhskiy region. Meditsinskiye nauki. 2016; 40 (4): 40-50. https://doi.org/10.21685/2072-3032-2016-4-5 (in Russian).</mixed-citation></citation-alternatives></ref><ref id="cit39"><label>39</label><citation-alternatives><mixed-citation xml:lang="ru">Баранов А.А., Намазова-Баранова Л.С., Брико Н.И. и др. Вакцинопрофилактика пневмококковой инфекции у детей. Педиатрическая фармакология. 2018; 15 (3): 200-211. https://doi.org/10.15690/pf.v15i3.1899.</mixed-citation><mixed-citation xml:lang="en">Baranov A.A., Namazova-Baranova L.S., Briko N.I. et al. [Vaccine prevention of pneumococcal infection in children]. Pediatricheskaya farmakologiya. 2018; 15 (3): 200-211. https://doi.org/10.15690/pf.v15i3.1899 (in Russian).</mixed-citation></citation-alternatives></ref><ref id="cit40"><label>40</label><citation-alternatives><mixed-citation xml:lang="ru">French N., Gordon S.B., Mwalukomo T. et al. A trial of a 7-valent pneumococcal conjugate vaccine in HIV-infected adults. N. Engl. J. Med. 2010; 362 (9): 812-822. https://doi.org/10.1056/NEJMoa0903029.</mixed-citation><mixed-citation xml:lang="en">French N., Gordon S.B., Mwalukomo T. et al. A trial of a 7-valent pneumococcal conjugate vaccine in HIV-infected adults. N. Engl. J. Med. 2010; 362 (9): 812-822. https://doi.org/10.1056/NEJMoa0903029.</mixed-citation></citation-alternatives></ref><ref id="cit41"><label>41</label><citation-alternatives><mixed-citation xml:lang="ru">Pollard A.J., Perrett K.P., Beverley P.C. Maintaining protection against invasive bacteria with protein polysaccharide conjugate vaccines. Nat. Rev. Immunol. 2009; 9 (3): 213-220. https://doi.org/10.1038/nri2494.</mixed-citation><mixed-citation xml:lang="en">Pollard A.J., Perrett K.P., Beverley P.C. Maintaining protection against invasive bacteria with protein polysaccharide conjugate vaccines. Nat. Rev. Immunol. 2009; 9 (3): 213-220. https://doi.org/10.1038/nri2494.</mixed-citation></citation-alternatives></ref><ref id="cit42"><label>42</label><citation-alternatives><mixed-citation xml:lang="ru">Theilacker C., Fletcher M.A., Jodar L., Gessner B.D. PCV13 vaccination of adults against pneumococcal disease: what we have learned from the community-acquired pneumonia immunization trial in adults (CAPiTA). Microorganisms. 2022; 10 (1): 127. https://doi.org/10.3390/microorganisms10010127.</mixed-citation><mixed-citation xml:lang="en">Theilacker C., Fletcher M.A., Jodar L., Gessner B.D. PCV13 vaccination of adults against pneumococcal disease: what we have learned from the community-acquired pneumonia immunization trial in adults (CAPiTA). Microorganisms. 2022; 10 (1): 127. https://doi.org/10.3390/microorganisms10010127.</mixed-citation></citation-alternatives></ref><ref id="cit43"><label>43</label><citation-alternatives><mixed-citation xml:lang="ru">Feldman C., Anderson R. Recent advances in the epidemiology and prevention of Streptococcus pneumonia infections. F1000Res. 2020; 9 (F1000 Faculty Rev.): 338. https://doi.org/10.12688/f1000research.22341.1.</mixed-citation><mixed-citation xml:lang="en">Feldman C., Anderson R. Recent advances in the epidemiology and prevention of Streptococcus pneumonia infections. F1000Res. 2020; 9 (F1000 Faculty Rev.): 338. https://doi.org/10.12688/f1000research.22341.1.</mixed-citation></citation-alternatives></ref><ref id="cit44"><label>44</label><citation-alternatives><mixed-citation xml:lang="ru">Костинов М.П., Протасов А.Д., Жестков А.В. и др. Влияние разных схем вакцинации против пневмококковой инфекции на клиническое течение хронической обструктивной болезни легких: фокус на изменении микробиоценоза мокроты. Туберкулез и болезни легких. 2021; 99 (7): 7-17. https://doi.org/10.21292/2075-1230-2021-99-7-7-17.</mixed-citation><mixed-citation xml:lang="en">Kostinov M.P., Protasov A.D., Zhestkov A.V. et al. [The effect of different regimens of vaccination against pneumococcal infection on the clinical course of chronic obstructive pulmonary disease: focus on changes in sputum microorganism population]. Tuberkulez i bolezni legkikh. 2021; 99 (7): 7-17. https://doi.org/10.21292/2075-1230-2021-99-7-7-17 (in Russian).</mixed-citation></citation-alternatives></ref><ref id="cit45"><label>45</label><citation-alternatives><mixed-citation xml:lang="ru">Харит С. М., Фридман И. В., Павлюкова А. Н. и др. Клиническая эффективность пневмококковой конъюгированной 13-валентной вакцины у детей раннего возраста. Педиатрическая фармакология. 2016; 13 (5): 443-447. https://doi.org/10.15690/pf.v13i5.1639.</mixed-citation><mixed-citation xml:lang="en">Kharit S. M., Fridman I. V., Pavlyukova A. N. et al. [Clinical efficacy of pneumococcal conjugate 13-valent vaccine in young children]. Pediatricheskaya farmakologiya. 2016; 13 (5): 443- 447. https://doi.org/10.15690/pf.v13i5.1639 (in Russian).</mixed-citation></citation-alternatives></ref><ref id="cit46"><label>46</label><citation-alternatives><mixed-citation xml:lang="ru">Чучалин А.Г., Брико Н.И., Авдеев С.Н. и др. Федеральные клинические рекомендации по вакцинопрофилактике пневмококковой инфекции у взрослых. Пульмонология. 2019; 29 (1): 19-34. https://doi.org/10.18093/0869-0189-2019-29-1-19-34.</mixed-citation><mixed-citation xml:lang="en">Chuchalin A.G., Briko N.I., Avdeev S.N. et al. [Federal clinical guidelines for vaccination prevention of pneumococcal infection in adults]. Pul’monologiya. 2019; 29 (1): 19-34. https://doi.org/10.18093/0869-0189-2019-29-1-19-34 (in Russian).</mixed-citation></citation-alternatives></ref><ref id="cit47"><label>47</label><citation-alternatives><mixed-citation xml:lang="ru">Брико Н.И., Фельдблюм И.В., Бикмиева А.В. и др. Вакцинопрофилактика взрослого населения против пневмококковой инфекции. Антибиотики и химиотерапия. 2019; 64 (1-2): 37-43. https://doi.org/10.24411/0235W2990W2019W10007.</mixed-citation><mixed-citation xml:lang="en">Briko N.I., Fel’dblyum I.V., Bikmiyeva A.V. et al. [Vaccine prophylaxis of the adult population against pneumococcal infection]. Antibiotiki i khimioterapiya. 2019; 64 (1-2): 37-43. https://doi.org/10.24411/0235W2990W2019W10007 (in Russian).</mixed-citation></citation-alternatives></ref></ref-list><fn-group><fn fn-type="conflict"><p>The authors declare that there are no conflicts of interest present.</p></fn></fn-group></back></article>
